Detailed information of SNP:
|
SNP ID:
sf0818655732(Gbrowse)
Chromosome: chr08 Position: 18655732 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.04% | 41.96% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818655732 | T->C | INTERGENIC | None |