Detailed information of SNP:
|
SNP ID:
sf0818681315(Gbrowse)
Chromosome: chr08 Position: 18681315 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 88.20% | 11.80% |
| All Indica | 771 | 79.77% | 20.23% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 92.95% | 7.05% |
| Indica II | 192 | 42.19% | 57.81% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818681315 | A->G | INTERGENIC | None |