Detailed information of SNP:
|
SNP ID:
sf0818701869(Gbrowse)
Chromosome: chr08 Position: 18701869 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 50.36% | 49.64% |
| All Indica | 780 | 80.38% | 19.62% |
| All Japonica | 476 | 3.36% | 96.64% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 370 | 84.05% | 15.95% |
| Indica II | 205 | 88.29% | 11.71% |
| Indica Intermediate | 205 | 65.85% | 34.15% |
| Temperate Japonica | 327 | 0.61% | 99.39% |
| Tropical Japonica | 81 | 11.11% | 88.89% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818701869 | A->G | INTERGENIC | None |