Detailed information of SNP:
|
SNP ID:
sf0818706788(Gbrowse)
Chromosome: chr08 Position: 18706788 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 96.01% | 3.99% |
| All Indica | 786 | 98.85% | 1.15% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 203 | 97.04% | 2.96% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818706788 | A->C | INTERGENIC | None |