Detailed information of SNP:
|
SNP ID:
sf0818709900(Gbrowse)
Chromosome: chr08 Position: 18709900 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 52.41% | 47.59% |
| All Indica | 793 | 78.69% | 21.31% |
| All Japonica | 495 | 5.66% | 94.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 83.38% | 16.62% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 209 | 59.33% | 40.67% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818709900 | G->C | INTERGENIC | None |