Detailed information of SNP:
|
SNP ID:
sf0818734024(Gbrowse)
Chromosome: chr08 Position: 18734024 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 51.89% | 48.11% |
| All Indica | 768 | 80.73% | 19.27% |
| All Japonica | 488 | 3.28% | 96.72% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 370 | 81.62% | 18.38% |
| Indica II | 205 | 92.68% | 7.32% |
| Indica Intermediate | 193 | 66.32% | 33.68% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 85 | 9.41% | 90.59% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818734024 | T->C | LOC_Os08g30440(LOC_Os08g30440.1) | Non-Synonymous SNP |