Detailed information of SNP:
|
SNP ID:
sf0818741683(Gbrowse)
Chromosome: chr08 Position: 18741683 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 58.74% | 41.26% |
| All Indica | 792 | 88.89% | 11.11% |
| All Japonica | 494 | 8.70% | 91.30% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 205 | 84.39% | 15.61% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818741683 | A->G | LOC_Os08g30450(LOC_Os08g30450.1) | INTRON |