Detailed information of SNP:
|
SNP ID:
sf0818775394(Gbrowse)
Chromosome: chr08 Position: 18775394 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 56.33% | 43.67% |
| All Indica | 795 | 87.42% | 12.58% |
| All Japonica | 495 | 5.45% | 94.55% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818775394 | T->G | LOC_Os08g30520(LOC_Os08g30520.1) | Non-Synonymous SNP |