Detailed information of SNP:
|
SNP ID:
sf0818848372(Gbrowse)
Chromosome: chr08 Position: 18848372 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.00% | 41.00% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 497 | 9.05% | 90.95% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818848372 | T->C | LOC_Os08g30590(LOC_Os08g30590.1) | INTRON |