Detailed information of SNP:
|
SNP ID:
sf0818857463(Gbrowse)
Chromosome: chr08 Position: 18857463 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 52.16% | 47.84% |
| All Indica | 792 | 81.19% | 18.81% |
| All Japonica | 494 | 3.04% | 96.96% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 205 | 68.78% | 31.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 9.89% | 90.11% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818857463 | G->A | LOC_Os08g30600(LOC_Os08g30600.1) | Non-Synonymous SNP |