Detailed information of SNP:
|
SNP ID:
sf0818916555(Gbrowse)
Chromosome: chr08 Position: 18916555 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 51.76% | 48.24% |
| All Indica | 724 | 19.89% | 80.11% |
| All Japonica | 490 | 96.73% | 3.27% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 346 | 18.50% | 81.50% |
| Indica II | 188 | 12.77% | 87.23% |
| Indica Intermediate | 190 | 29.47% | 70.53% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818916555 | C->T | INTERGENIC | None |