Detailed information of SNP:
|
SNP ID:
sf0818937456(Gbrowse)
Chromosome: chr08 Position: 18937456 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.37% | 44.63% |
| All Indica | 798 | 85.59% | 14.41% |
| All Japonica | 493 | 5.27% | 94.73% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 91 | 19.78% | 80.22% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818937456 | A->T | LOC_Os08g30710(LOC_Os08g30710.1) | INTRON |