Detailed information of SNP:
|
SNP ID:
sf0819023398(Gbrowse)
Chromosome: chr08 Position: 19023398 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1210 | 83.64% | 16.36% |
| All Indica | 596 | 68.79% | 31.21% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 243 | 74.90% | 25.10% |
| Indica II | 173 | 43.93% | 56.07% |
| Indica Intermediate | 180 | 84.44% | 15.56% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819023398 | G->A | LOC_Os08g30810(LOC_Os08g30810.1) | INTRON |