Detailed information of SNP:
|
SNP ID:
sf0819065958(Gbrowse)
Chromosome: chr08 Position: 19065958 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 62.79% | 37.21% |
| All Indica | 783 | 35.76% | 64.24% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 23.69% | 76.31% |
| Indica II | 211 | 29.38% | 70.62% |
| Indica Intermediate | 209 | 63.16% | 36.84% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819065958 | C->T | INTERGENIC | None |