Detailed information of SNP:
|
SNP ID:
sf0819072409(Gbrowse)
Chromosome: chr08 Position: 19072409 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 88.16% | 11.84% |
| All Indica | 794 | 99.37% | 0.63% |
| All Japonica | 471 | 69.43% | 30.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 60.25% | 39.75% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 63 | 84.13% | 15.87% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819072409 | T->C | LOC_Os08g30900(LOC_Os08g30900.1) | INTRON |
| sf0819072409 | T->C | LOC_Os08g30900(LOC_Os08g30900.2) | INTRON |