Detailed information of SNP:
|
SNP ID:
sf0819075391(Gbrowse)
Chromosome: chr08 Position: 19075391 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 85.65% | 14.35% |
| All Indica | 775 | 83.48% | 16.52% |
| All Japonica | 491 | 93.89% | 6.11% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 211 | 82.94% | 17.06% |
| Indica Intermediate | 194 | 56.70% | 43.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 71.59% | 28.41% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819075391 | G->T | INTERGENIC | None |