Detailed information of SNP:
|
SNP ID:
sf0819091380(Gbrowse)
Chromosome: chr08 Position: 19091380 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819091380 | T->C | INTERGENIC | None |