Detailed information of SNP:
|
SNP ID:
sf0819101759(Gbrowse)
Chromosome: chr08 Position: 19101759 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.77% | 36.23% |
| All Indica | 793 | 96.72% | 3.28% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819101759 | T->C | LOC_Os08g30940(LOC_Os08g30940.1) | Non-Synonymous SNP |