Detailed information of SNP:
|
SNP ID:
sf0819101776(Gbrowse)
Chromosome: chr08 Position: 19101776 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.23% | 34.77% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819101776 | T->C | LOC_Os08g30940(LOC_Os08g30940.1) | INTRON |
| sf0819101776 | T->C | LOC_Os08g30940(LOC_Os08g30940.1) | SNPs that disrupt splice sites |