Detailed information of SNP:
|
SNP ID:
sf0819102094(Gbrowse)
Chromosome: chr08 Position: 19102094 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 98.16% | 1.84% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 95.33% | 4.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819102094 | G->T | LOC_Os08g30940(LOC_Os08g30940.1) | INTRON |
| sf0819102094 | G->T | LOC_Os08g30940(LOC_Os08g30940.1) | SNPs that disrupt splice sites |