Detailed information of SNP:
|
SNP ID:
sf0819102724(Gbrowse)
Chromosome: chr08 Position: 19102724 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 76.74% | 23.26% |
| All Indica | 756 | 93.78% | 6.22% |
| All Japonica | 479 | 46.56% | 53.44% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 346 | 90.46% | 9.54% |
| Indica II | 205 | 96.59% | 3.41% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 330 | 40.61% | 59.39% |
| Tropical Japonica | 85 | 72.94% | 27.06% |
| Japonica Intermediate | 64 | 42.19% | 57.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819102724 | C->T | LOC_Os08g30940(LOC_Os08g30940.1) | SNPs that introduce stop codons |