Detailed information of SNP:
|
SNP ID:
sf0819104157(Gbrowse)
Chromosome: chr08 Position: 19104157 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 96.47% | 3.53% |
| All Indica | 770 | 94.68% | 5.32% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 197 | 94.92% | 5.08% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819104157 | C->T | LOC_Os08g30940(LOC_Os08g30940.1) | Synonymous |