Detailed information of SNP:
|
SNP ID:
sf0819104698(Gbrowse)
Chromosome: chr08 Position: 19104698 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 93.75% | 6.25% |
| All Indica | 777 | 92.92% | 7.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 201 | 87.06% | 12.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819104698 | T->C | INTERGENIC | None |