Detailed information of SNP:
|
SNP ID:
sf0819110840(Gbrowse)
Chromosome: chr08 Position: 19110840 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 50.75% | 49.25% |
| All Indica | 774 | 78.94% | 21.06% |
| All Japonica | 495 | 4.85% | 95.15% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 361 | 79.22% | 20.78% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 200 | 76.50% | 23.50% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819110840 | T->C | INTERGENIC | None |