Detailed information of SNP:
|
SNP ID:
sf0819110984(Gbrowse)
Chromosome: chr08 Position: 19110984 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 84.17% | 15.83% |
| All Indica | 789 | 78.58% | 21.42% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 207 | 72.95% | 27.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819110984 | T->C | INTERGENIC | None |