Detailed information of SNP:
|
SNP ID:
sf0819111163(Gbrowse)
Chromosome: chr08 Position: 19111163 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 54.94% | 45.06% |
| All Indica | 778 | 85.22% | 14.78% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 363 | 85.95% | 14.05% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 204 | 84.31% | 15.69% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819111163 | C->G | LOC_Os08g30960(LOC_Os08g30960.1) | Non-Synonymous SNP |