Detailed information of SNP:
|
SNP ID:
sf0819111559(Gbrowse)
Chromosome: chr08 Position: 19111559 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.74% | 39.26% |
| All Indica | 792 | 92.30% | 7.70% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 370 | 92.70% | 7.30% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819111559 | T->C | LOC_Os08g30960(LOC_Os08g30960.1) | INTRON |