Detailed information of SNP:
|
SNP ID:
sf0819111560(Gbrowse)
Chromosome: chr08 Position: 19111560 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 60.92% | 39.08% |
| All Indica | 792 | 92.42% | 7.58% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819111560 | A->G | LOC_Os08g30960(LOC_Os08g30960.1) | INTRON |