Detailed information of SNP:



SNP ID: sf0819111560(Gbrowse)

Chromosome: chr08

Position: 19111560
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1410 60.92% 39.08%
All Indica792 92.42% 7.58%
All Japonica496 9.88% 90.12%
Aus66 92.42% 7.58%
Indica I370 92.43% 7.57%
Indica II212 92.92% 7.08%
Indica Intermediate210 91.90% 8.10%
Temperate Japonica335 3.28% 96.72%
Tropical Japonica93 34.41% 65.59%
Japonica Intermediate68 8.82% 91.18%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 40.48% 59.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0819111560 A->G LOC_Os08g30960(LOC_Os08g30960.1) INTRON