Detailed information of SNP:
|
SNP ID:
sf0819112077(Gbrowse)
Chromosome: chr08 Position: 19112077 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.58% | 39.42% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819112077 | A->G | LOC_Os08g30960(LOC_Os08g30960.1) | Synonymous |