Detailed information of SNP:
|
SNP ID:
sf0819126850(Gbrowse)
Chromosome: chr08 Position: 19126850 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.48% | 35.52% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 495 | 8.89% | 91.11% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819126850 | T->C | INTERGENIC | None |