Detailed information of SNP:
|
SNP ID:
sf0819128416(Gbrowse)
Chromosome: chr08 Position: 19128416 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.57% | 41.43% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 496 | 8.87% | 91.13% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819128416 | G->T | LOC_Os08g30990(LOC_Os08g30990.1) | Non-Synonymous SNP |