Detailed information of SNP:
|
SNP ID:
sf0819128650(Gbrowse)
Chromosome: chr08 Position: 19128650 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 91.80% | 8.20% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 481 | 78.17% | 21.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 325 | 69.54% | 30.46% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819128650 | A->G | LOC_Os08g30990(LOC_Os08g30990.1) | Synonymous |