Detailed information of SNP:
|
SNP ID:
sf0819133447(Gbrowse)
Chromosome: chr08 Position: 19133447 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.11% | 3.89% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819133447 | C->T | LOC_Os08g30990(LOC_Os08g30990.1) | Synonymous |