Detailed information of SNP:
|
SNP ID:
sf0819134044(Gbrowse)
Chromosome: chr08 Position: 19134044 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 84.42% | 15.58% |
| All Indica | 792 | 76.89% | 23.11% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 206 | 47.57% | 52.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819134044 | C->A | LOC_Os08g30990(LOC_Os08g30990.1) | Non-Synonymous SNP |