Detailed information of SNP:
|
SNP ID:
sf0819135227(Gbrowse)
Chromosome: chr08 Position: 19135227 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.69% | 37.31% |
| All Indica | 795 | 95.35% | 4.65% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819135227 | C->T | INTERGENIC | None |