Detailed information of SNP:
|
SNP ID:
sf0819135390(Gbrowse)
Chromosome: chr08 Position: 19135390 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.36% | 33.64% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819135390 | A->G | INTERGENIC | None |