Detailed information of SNP:
|
SNP ID:
sf0819147139(Gbrowse)
Chromosome: chr08 Position: 19147139 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.59% | 34.41% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819147139 | A->G | LOC_Os08g31010(LOC_Os08g31010.1) | Non-Synonymous SNP |