Detailed information of SNP:
|
SNP ID:
sf0819147427(Gbrowse)
Chromosome: chr08 Position: 19147427 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 87.18% | 12.82% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 462 | 63.20% | 36.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 311 | 57.88% | 42.12% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 63 | 50.79% | 49.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819147427 | A->T | LOC_Os08g31010(LOC_Os08g31010.1) | Non-Synonymous SNP |