Detailed information of SNP:
|
SNP ID:
sf0819177479(Gbrowse)
Chromosome: chr08 Position: 19177479 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 89.16% | 10.84% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 417 | 66.19% | 33.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 273 | 56.78% | 43.22% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 51 | 86.27% | 13.73% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819177479 | T->G | LOC_Os08g31060(LOC_Os08g31060.1) | INTRON |