Detailed information of SNP:
|
SNP ID:
sf0819192847(Gbrowse)
Chromosome: chr08 Position: 19192847 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 77.75% | 22.25% |
| All Indica | 692 | 59.68% | 40.32% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 312 | 63.78% | 36.22% |
| Indica II | 183 | 33.88% | 66.12% |
| Indica Intermediate | 197 | 77.16% | 22.84% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819192847 | C->T | INTERGENIC | None |