Detailed information of SNP:
|
SNP ID:
sf0819196294(Gbrowse)
Chromosome: chr08 Position: 19196294 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 92.02% | 7.98% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 371 | 74.66% | 25.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 235 | 79.15% | 20.85% |
| Tropical Japonica | 83 | 54.22% | 45.78% |
| Japonica Intermediate | 53 | 86.79% | 13.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819196294 | G->A | INTERGENIC | None |