Detailed information of SNP:
|
SNP ID:
sf0819243217(Gbrowse)
Chromosome: chr08 Position: 19243217 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 95.42% | 4.58% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 437 | 88.56% | 11.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 90.24% | 9.76% |
| Tropical Japonica | 82 | 97.56% | 2.44% |
| Japonica Intermediate | 58 | 67.24% | 32.76% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819243217 | G->A | INTERGENIC | None |