Detailed information of SNP:
|
SNP ID:
sf0819243766(Gbrowse)
Chromosome: chr08 Position: 19243766 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 98.66% | 1.34% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 429 | 96.27% | 3.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 285 | 95.79% | 4.21% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 59 | 94.92% | 5.08% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819243766 | T->C | INTERGENIC | None |