Detailed information of SNP:
|
SNP ID:
sf0819249209(Gbrowse)
Chromosome: chr08 Position: 19249209 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 66.08% | 33.92% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 488 | 9.63% | 90.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 3.33% | 96.67% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819249209 | A->G | LOC_Os08g31150(LOC_Os08g31150.1) | INTRON |