Detailed information of SNP:
|
SNP ID:
sf0819255483(Gbrowse)
Chromosome: chr08 Position: 19255483 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 57.76% | 42.24% |
| All Indica | 792 | 87.50% | 12.50% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819255483 | A->T | INTERGENIC | None |