Detailed information of SNP:
|
SNP ID:
sf0819273106(Gbrowse)
Chromosome: chr08 Position: 19273106 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.34% | 12.66% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 494 | 80.57% | 19.43% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 332 | 73.19% | 26.81% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819273106 | T->C | INTERGENIC | None |