Detailed information of SNP:
|
SNP ID:
sf0819301297(Gbrowse)
Chromosome: chr08 Position: 19301297 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.48% | 33.52% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 27.77% | 72.23% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 27.46% | 72.54% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819301297 | A->G | INTERGENIC | None |