Detailed information of SNP:
|
SNP ID:
sf0819317611(Gbrowse)
Chromosome: chr08 Position: 19317611 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 86.00% | 14.00% |
| All Indica | 795 | 78.87% | 21.13% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 210 | 52.86% | 47.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819317611 | C->T | INTERGENIC | None |