Detailed information of SNP:
|
SNP ID:
sf0819318961(Gbrowse)
Chromosome: chr08 Position: 19318961 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.80% | 34.20% |
| All Indica | 798 | 87.34% | 12.66% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819318961 | C->T | INTERGENIC | None |