Detailed information of SNP:
|
SNP ID:
sf0819319007(Gbrowse)
Chromosome: chr08 Position: 19319007 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 69.46% | 30.54% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819319007 | G->A | INTERGENIC | None |